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Image Processing
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A UNIX primer.
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A Fortran f77 primer.
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Wiki: Software Tools for Molecular Microscopy
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Structural Biology Grid
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MacResearch
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PyMol
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Chimera UCSF's visualization program
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IPLT Image Processing Library and Toolkit
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EMD EM Dep database search
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SPIDER is good for single particles.
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EMAN for Single Particle Analysis and Electron Micrograph Analysis.
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IMOD for tomographic reconstructions, from the
Boulder Laboratory for 3-D Electron Microscopy of Cells.
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DeRosier's Helical Package
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bsoft Bernard Heymann's Bsoft package
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DINO
is Ansgar Philippsen's great Visualization Program for Structural Biology
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- POVRAY
- FreeAlign is the program of Niko Grigorieff.
- MRC programs (Richard Henderson).
- CCP4 Macromolecular Crystallography, also used to display results of the MRC image treatment.
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Semper
- Synoptics Ltd.,
271 Cambridge Science Park, Milton Road, Cambridge CB4 4WE, UK,
Tel. x44(0)1223 423223, FAX: x44(0)1223 420020, email: sales@synoptics.co.uk - Public Domain Software for Semper and others
- Image processing close to Semper
- Synoptics Ltd.,
271 Cambridge Science Park, Milton Road, Cambridge CB4 4WE, UK,
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SPECTRA
(These links are outdated, they don't work any more.)
- NCMI is the National Center for Macromolecular Imaging at Baylor College of Medicine, Huston, Texas, USA.
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Download SPECTRA here.
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Imagic 5
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Image Science Software GmbH
Heilbronner Strasse 10
D-10711 Berlin, Germany
E.mail: michael@ImageScience.de
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Image Science Software GmbH
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Tyson, a tool for 3D reconstruction of bio molecules.
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The HOLE program
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EMBL Software
- EMBL Virus Structure Resource
- EMBL Icos Software Page
- EMBL iTools
a python program that is useful to create command scripts to run icosahedral programs
- EMBL Virus Structure Resource
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PHOELIX
of
Michael Whittaker
Department of Cell Biology
The Scripps Research Institute
La Jolla, CA 92037
mike@scripps.edu. - CHIME Netscape Implement
Workshop on Single Particle Reconstruction, Map Interpretation and Visualization
